« Previous
Next »
Medical Image Analysis
Volume 14, Issue 6
, Pages 770-783
, December 2010
Detection of neuron membranes in electron microscopy images using a serial neural network architecture
References
- . A computational framework for ultrastructural mapping of neural circuitry. PLoS Biol. 2009;7(3):e74
- . Segmentation of SBFSEM volume data of neural tissue by hierarchical classification. In: Rigoll G editors. Pattern Recognition. LNCS. vol. 5096:Springer; 2008;pp. 142–152. doi:10.1007/978-3-540-69321-5_15. ISBN: 978-3-540-69320-8
- Awate, S.P., Whitaker, R.T., 2006. Unsupervised, information-theoretic, adaptive image filtering for image restoration. In: IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 28 (3), pp. 364–376.
- Awate, S.P., Tasdizen, T., Whitaker, R.T., 2006. Unsupervised texture segmentation with nonparametric neighborhood statistics. In: Proceedings of the European Conference on Computer Vision, pp. 494–507.
- Borenstein, E., Sharon, E., Ullman, S., 2004. Combining top-down and bottom-up segmentation. In: Proceedings of the 2004 Conference on Computer Vision and Pattern Recognition Workshop (CVPRW’04), vol. 4. IEEE Computer Society, Washington, DC, USA, p. 46. ISBN: 0-7695-2158-4.
- . Towards neural circuit reconstruction with volume electron microscopy techniques. Curr. Opin. Neurobiol. 2006;16(5):562–570doi:10.1016/j.conb.2006.08.010. <http://dx.doi.org/10.1016/j.conb.2006.08.010>
- . Towards neural circuit reconstruction with volume electron microscopy techniques. Curr. Opin. Neurobiol. 2006;16(5):562–570
- Buades, A., Coll, B., Morel, J.-M., 2005. A non-local algorithm for image denoising. In: Proceedings of IEEE Conference on Computer Vision and Pattern Recognition, pp. 60–65.
- . Extracting features from faces using compression networks. In: Touretzky DS, Elman JL, Sejnowski TJ, Hinton GE editor. Proceedings of the 1990 Connectionist Models Summer School. San Mateo: Morgan Kaufman; 1990;p. 328–337
- . Approximation by superpositions of a sigmoidal function. Math. Control, Signals, Syst. 1989;2(4):303–314
- . Adaptive axonal remodeling in the midbrain auditory space map. J. Neurosci. 2001;21(9):3161–3174<http://www.jneurosci.org/cgi/content/abstract/21/9/3161>
- Dollar, P., Tu, Z., Belongie, S., 2006. Supervised learning of edges and object boundaries. In: IEEE Computer Society Conference on Computer Vision and Pattern Recognition, vol. 2. IEEE Computer Society, Los Alamitos, CA, USA, pp. 1964–1971. doi:10.1109/CVPR.2006.298. ISSN: 1063-6919.
- . Extending unbiased stereology of brain ultrastructure to three-dimensional volumes. J. Am. Med. Inform. Assoc. 2001;8(1):1–16
- Fowlkes, C., Belongie, S., Chung, F., Malik, J., 2004. Spectral grouping using the Nyström method. In: IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 26, pp. 214–225.
- Freund, Y., Schapire, R.E., 1995. A decision-theoretic generalization of on-line learning and an application to boosting. In: EuroCOLT ’95: Proceedings of the Second European Conference on Computational Learning Theory. Springer-Verlag, London, UK, pp. 23–37. ISBN: 3-540-59119-2.
- . Neural Networks – A Comprehensive Foundation. second ed.. Prentice-Hall; 1999;
- . Approximation capabilities of multilayer feedforward networks. Neural Networks. 1991;4(2):251–257doi:10.1016/0893-6080(91)90009-T
- Jain, V., Murray, J., Roth, F., Turaga, S., Zhigulin, V., Briggman, K., Helmstaedter, M., Denk, W., Seung, H., 2007. Supervised learning of image restoration with convolutional networks. In: IEEE 11th International Conference on Computer Vision, pp. 1–8.
- . Control of type-D GABAergic neuron differentiation by C. elegans UNC-30 homeodomain protein. Nature. 1994;372(6508):780–783
- . Retinal remodeling during retinal degeneration. Exp. Eye Res. 2005;81:123–137
- . Retinal remodeling triggered by photoreceptor degenerations. J. Comp. Neurol. 2003;464:1–16
- . Retinal remodelling. Clin. Exp. Optom. 2005;88:282–291
- Jurrus, E., Whitaker, R., Jones, B., Marc, R., Tasdizen, T., 2008. An optimal-path approach for neural circuit reconstruction. In: Proceedings of the 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 1609–1612.
- . Axon tracking in serial block-face scanning electron microscopy. Med. Image Anal. 2009;13(1):180–188
- . Brain-derived neurotrophic factor induces hyperexcitable reentrant circuits in the dentate gyrus. J. Neurosci. 2004;24:7215–7224
- . Representing and recognizing the visual appearance of materials using three-dimensional textons. Int. J. Comput. Vis. 2001;43(1):29–44doi:10.1023/A:1011126920638. ISSN: 0920-5691
- . Contour-propagation algorithms for semi-automated reconstruction of neural processes. J. Neurosci. Methods. 2008;167:349–357
- Mahamud, S., Williams, L., Thornber, K., Xu, K., 2003. Segmentation of multiple salient closed contours from real images. In: IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 25 (4), pp. 433–444. doi:10.1109/TPAMI.2003.1190570. ISSN: 0162-8828
- . Neural remodeling in retinal degeneration. Prog. Retinal Eye Res. 2003;22:607–655
- . Neural reprogramming in retinal degeneration. Invest. Ophthalmol. Vis. Sci. 2007;48:3364–3371
- . Extreme retinal remodeling triggered by light damage: implications for age related macular degeneration. Mol. Vis. 2008;14:782–806
- Mishchenko, Y., 2009. Automation of 3D reconstruction of neural tissue from large volume of conventional serial section transmission electron micrographs. J. Neurosci. Methods.
- Venkataraju, K.U., Paiva, A., Jurrus, E., Tasdizen, T., 2009. Automatic markup of neural cell membranes using boosted decision stumps. In: Proceedings of the 6th IEEE International Symposium on Biomedical Imaging, pp. 1039–1042.
- Paiva, A.R., Jurrus, E., Tasdizen, T., 2010. Using sequential context for image analysis. In: Proceedings of the International Conference on Pattern Recognition.
- . Ectopic synaptogenesis in the mammalian retina caused by rod photoreceptor-specific mutations. Nat. Neurosci. 2000;3:1121–1127
- Pizer, S., Johnston, R., Ericksen, J., Yankaskas, B., Muller, K., 1990. Contrast-limited adaptive histogram equalization: speed and effectiveness. In: Proceedings of the First Conference on Visualization in Biomedical Computing, pp. 337–345. doi:10.1109/VBC.1990.109340.
- . Correlation between reactive sprouting and microtubule protein expression in epileptic hippocampus. Neuroscience. 1994;61:773–787
- . Knowledge-based training of artificial neural networks for autonomous robot driving. In: Connell J, Mahadevan S editor. Robot Learning. Kluwer Academic Publishing; 1993;p. 19–43
- . Neural and Adaptive Systems: Fundamentals Through Simulations. John Wiley & Sons; 2000;
- . Visual speech recognition by recurrent neural networks. J. Electron. Imag. 1998;7(1):61–69
- Ren, X., Malik, J., 2002. A probabilistic multi-scale model for contour completion based on image statistics. In: ECCV ’02: Proceedings of the 7th European Conference on Computer Vision, Part I. Springer-Verlag, London, UK, pp. 312–327. ISBN: 3-540-43745-2.
- Ren, X., Fowlkes, C., Malik, J., 2005. Scale-invariant contour completion using conditional random fields. In: Tenth IEEE International Conference on Computer Vision 2005, ICCV 2005, vol. 2, pp. 1214–1221. doi:10.1109/ICCV.2005.213. ISSN: 1550-5499.
- Schmid, C., 2001. Constructing models for content-based image retrieval. In: Proceedings of the 2001 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, CVPR 2001, vol. 2, pp. II–39–II–45. doi:10.1109/CVPR.2001.990922. ISSN: 1063-6919.
- Shashua, A., Ullman, S. 1988. Structural saliency: the detection of globally salient structures using a locally connected network. In: Second International Conference on Computer Vision, pp. 321–327.
- Shotton, J., Blake, A., Cipolla, R., 2008. Multiscale categorical object recognition using contour fragments. In: IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 30 (7), pp. 1270–1281. doi:10.1109/TPAMI.2007.70772. ISSN: 0162-8828.
- . Overview on the structure, composition, function, development, and plasticity of hippocampal dendritic spines. Hippocampus. 2000;10:501–511
- . The human connectome: a structural description of the human brain. PLoS Comput. Biol. 2005;1:e42
- . Seizure-induced axonal sprouting: assessing connections between injury, local circuits, and epileptogenesis. Epilepsy. Curr. 2002;2:86–91
- Tang, C.-K., Medioni, G., 2002. Curvature-augmented tensor voting for shape inference from noisy 3D data. In: IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 24 (6), pp. 858–864. doi:10.1109/TPAMI.2002.1008395. ISSN: 0162-8828
- Tasdizen, T., 2008. Principal components for non-local means image denoising. In: Proceeding of International Conference on Image Processing.
- Tasdizen, T., Whitaker, R., Marc, R., Jones, B., 2005. Enhancement of cell boundaries in transmission electron microscopy images. In: ICIP, pp. 642–645.
- . Auto-context and its application to high-level vision tasks. IEEE Conf. Comput. Vis. Patt. Recognit. 2008;1–8
- Varma, M., Zisserman, A., 2003. Texture classification: are filter banks necessary? In: Proceedings of the 2003 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, vol. 2, pp. II-691-8. doi:10.1109/CVPR.2003.1211534. ISSN: 1063-6919.
- Vazquez, L., Sapiro, G., Randall, G., 1998. Segmenting neurons in electronic microscopy via geometric tracing. In: Proceedings of ICIP, pp. 814–818.
- Vu, N., Manjunath, B., 2008. Graph cut segmentation of neuronal structures from transmission electron micrographs. In: 15th IEEE International Conference on Image Processing 2008, ICIP 2008, pp. 725–728. doi:10.1109/ICIP.2008.4711857. ISSN: 1522-4880.
- . Promising research: vision-based robot positioning using neural networks. Image Vis. Comput. 1996;14(10):715–732
- . The structure of the nervous system of the nematode Caenorhabditis elegans. Phil. Trans. Roy. Soc. Lond. Ser. B Biol. Sci. 1986;314:1–340
- . The sensory circuitry for sexual attraction in C. elegans males. Curr. Biol. 2007;17(21):1847–1857
- Zhu, Q., Song, G., Shi, J., 2007. Untangling cycles for contour grouping. In: IEEE 11th International Conference on Computer Vision 2007, ICCV 2007, pp. 1–8. doi:10.1109/ICCV.2007.4408929. ISSN: 1550-5499.
PII: S1361-8415(10)00065-4
doi: 10.1016/j.media.2010.06.002
© 2010 Elsevier B.V. All rights reserved.
« Previous
Next »
Medical Image Analysis
Volume 14, Issue 6
, Pages 770-783
, December 2010
