Medical Image Analysis
Volume 16, Issue 3 , Pages 744-753 , April 2012

CranialVault and its CRAVE tools: A clinical computer assistance system for deep brain stimulation (DBS) therapy

  • Pierre-François D’Haese

      Affiliations

    • Dept. of Electrical Eng. & Computer Science, Vanderbilt University, Nashville, TN, USA
    • Corresponding Author InformationCorresponding author. Tel.: +1 6156921219.
    • ,
  • Srivatsan Pallavaram

      Affiliations

    • Dept. of Electrical Eng. & Computer Science, Vanderbilt University, Nashville, TN, USA
    • ,
  • Rui Li

      Affiliations

    • Dept. of Electrical Eng. & Computer Science, Vanderbilt University, Nashville, TN, USA
    • ,
  • Michael S. Remple

      Affiliations

    • Dept. of Neurosurgery, Vanderbilt University Medical Center, Nashville, TN, USA
    • ,
  • Chris Kao

      Affiliations

    • Dept. of Neurosurgery, Vanderbilt University Medical Center, Nashville, TN, USA
    • ,
  • Joseph S. Neimat

      Affiliations

    • Dept. of Neurosurgery, Vanderbilt University Medical Center, Nashville, TN, USA
    • ,
  • Peter E. Konrad

      Affiliations

    • Dept. of Neurosurgery, Vanderbilt University Medical Center, Nashville, TN, USA
    • ,
  • Benoit M. Dawant

      Affiliations

    • Dept. of Electrical Eng. & Computer Science, Vanderbilt University, Nashville, TN, USA

Received 12 September 2009 ,Revised 9 March 2010 ,Accepted 11 July 2010.

References 

  1. Andrade-Souza YM, Schwalb JM, Hamani C, Eltahawy H, Hoque T, Saint-Cyr J, et al. Comparison of three methods of targeting the subthalamic nucleus for chronic stimulation in Parkinson’s disease. Neurosurgery. 2008;62(Suppl. 2):875–883
  2. Bardinet E, Bhattacharjee M, Dormont D, Pidoux B, Malandain G, Schüpbach M, et al. A three-dimensional histological atlas of the human basal ganglia. II. Atlas deformation strategy and evaluation in deep brain stimulation for Parkinson disease. J. Neurosurg. 2009;110:208–219
  3. Burn DJ, Troster AI. Neuropsychiatric complications of medical and surgical therapies for Parkinson’s disease. J. Geriatr. Psychiatry Neurol. 2004;17:172–180
  4. Butson CR, McIntyre CC. Current steering to control the volume of tissue activated during deep brain stimulation. Brain Stimulat. 2008;1(1):7–15
  5. Butson CR, Cooper SE, Henderson JM, McIntyre CC. Patient-specific analysis of the volume of tissue activated during deep brain stimulation. Neuroimage. 2007;34(2):661–670
  6. Castro FJ, Pollo C, Cuisenaire O, Villemure J-G, Thiran J-P. Validation of experts versus atlas-based and automatic registration methods for subthalamic nucleus targeting on MRI. Int. J. CARS. 2006;1(1):5–12
  7. Castro FJ, Pollo C, Meuli R, Maeder P, Cuisenaire O, Cuadra MB, et al. A cross validation study of deep brain stimulation targeting: from experts to atlas-based, segmentation-based and automatic registration algorithms. IEEE Trans Med Imaging. 2006;25(11):1440–1450
  8. Chakravarty MM, Bertrand G, Hodge CP, Sadikot AF, Collins DL. The creation of a brain atlas for image guided neurosurgery using serial histological data. Neuroimage. 2006;30(2):359–376
  9. Chakravarty, M.M., Sadikot, A.F., Mongia, S., Bertrand, G., Collins, D.L. 2006b. Towards a multi-modal atlas for neurosurgical planning. In: Lecture Notes in Computer Science, MICCAI, pp. 389–396.
  10. D’Haese, P.-F., Cetinkaya, E., Kao, C., Fitzpatrick, J.M., Konrad, P.E., Dawant, B.M., 2004. Toward the creation of an electrophysiological atlas for the pre-operative planning and intra-operative guidance of deep brain stimulators (DBS) implantation. In: LNCS MICCAI (1), pp. 729–736.
  11. D’Haese, P.-F., Cetinkaya, E., Konrad, P.E., Kao, C., Dawant, B.M., 2005a. Computer-aided placement of deep brain stimulators: from planning to intraoperative guidance. In: IEEE Trans Med Imaging, pp. 1469–1478.
  12. D’Haese, P.-F., Li, R., Pallavaram, S., Shanks, T., Zahos, P., Neimat, J., Konrad, P., Dawant, B.M., 2010. Early clinical evaluation of a computer assisted system for deep brain surgeries: 1 year of clinical assistance. In: N. Navab, P. Janin (Eds.), IPCAI 2010, LNCS 6135, pp. 190–199.
  13. D’Haese P-F, Pallavaram S, Niermann K, Spooner J, Kao C, Konrad PE, et al. Automatic selection of DBS target points using multiple electrophysiological atlases. LNCS (MICCAI). 2005;3750(Pt. 2):427–434
  14. D’Haese, P.-F., Pallavaram, S., Yu, H., Spooner, J., Konrad, P.E., Dawant, B.M., 2006. Deformable physiological atlas-based programming of deep brain stimulators: a feasibility study. In: LNCS (WBIR), Utrecht, The Netherlands, pp. 144–150.
  15. Finnis KW, Starreveld YP, Parrent AG, Sadikot AF, Peters TM. Three dimensional database of subcortical electrophysiology for image-guided stereotactic functional neurosurgery. IEEE Trans Med Imaging. 2003;22(11):93–104
  16. Gironell A, Amirian G, Kulisevsky J, Molet J. Usefulness of an intraoperative electrophysiological navigator system for subthalamic nucleus surgery in Parkinson’s disease. Stereotact. Funct. Neurosurg. 2005;83:101–107
  17. Guo T, Finnis KW, Parrent AG, Peters TM. Development and application of functional databases for planning deep-brain neurosurgical procedures. LNCS (MICCAI). 2005;3749:835–842
  18. Guo T, Finnis KW, Deoni SCL, Parrent AG, Peters TM. Comparison of different targeting methods for subthalamic nucleus deep brain stimulation. LNCS (MICCAI). 2006;768–775
  19. Hershey, T., Revilla, F.J., Wernle, A., Schneider Gibson, P., Dowling, J.L., Perlmutter, J.S., 2003. STN stimulation – induced impairment in cognitive control in PD. Society for Neuroscience Abstract Viewer and Itinerary Planner Abstract No. 949.16.
  20. Houeto JL, Mesnage V, Mallet L, Pillon B, Gargiulo M, du Moncel ST, et al. Behavioural disorders, Parkinson’s disease and subthalamic stimulation. J. Neurol. Neurosurg. Psychiatry. 2002;72:701–707
  21. Luis Luján J, Noecker AM, Butson CR, Cooper SE, Walter BL, Vitek JL, et al. Automated 3-dimensional brain atlas fitting to microelectrode recordings from deep brain stimulation surgeries. Stereotact. Funct. Neurosurg. 2009;87:229–240
  22. Maks, C.B., Butson, C.R., Walter, B.L., Vitek, J.L., McIntyre, C.C., 2009. Deep brain stimulation activation volumes and their association with neurophysiological mapping and therapeutic outcomes. Neurol. Neurosurg. Psychiatry. doi:10.1136/jnnp.2007.126219 (16.01.09).
  23. Medtronic. 2009. Movement disorders fact sheet. In © Medtronic Inc.
  24. Miocinovic, S., Noecker, A.M., Maks, C.B., Butson, C.R., McIntyre, Cameron C., 2007. Cicerone: stereotactic neurophysiological recording and deep brain stimulation electrode placement software system. Operative Neuromodulation Volume 2: Neural Networks Surgery 9, 561–567. doi:10.1007/978-3-211-33081-4_65.
  25. Nowinski WL, Belov D, Benabid AL. An algorithm for rapid calculation of a probabilistic functional atlas of subcortical structures from electrophysiological data collected during functional neurosurgery procedures. Neuroimage. 2003;18:143–155
  26. Nowinski WL, Belov D, Pollak P, Benabid AL. Statistical analysis of 168 bilateral subthalamic nucleus implantations by means of the probabilistic functional atlas. Neurosurgery. 2005;57(4):319–330
  27. Nowinski WL, Thirunavuukarasuu A, Liu J, Benabid AL. Correlation between the anatomical and functional human subthalamic nucleus. Stereotact. Funct. Neurosurg. 2007;85:88–93
  28. Pallavaram S, Yu H, Spooner J, D’Haese P-F, Bodenheimer B, Konrad PE, et al. Inter-surgeon variability in the selection of anterior and posterior commissures and its potential effects on target localization. J. Stereotact. Funct. Neurosurg. 2008;86:113–119
  29. Pallavaram S, D’Haese P-F, Kao C, Yu H, Remple M, Neimat JS, et al. A new method for creating electrophysiological maps for DBS surgery and their application to surgical guidance. In: LNCS (MICCAI), Part1. Springer-Verlag; 2008;p. 670–677
  30. Pallavaram S, D’Haese P-F, Remple M, Neimat JS, Kao C, Konrad PE, et al. A method to correct for brain shift when building electrophysiological atlases for deep brain stimulation (DBS) surgery. LNCS (MICCAI, London). 2009;5761:557–564
  31. Pallavaram, S., D’Haese, P.-F., Remple, M., Neimat, J.S., Kao, C., Li, R., Konrad, P.E., Dawant, B.M., 2009b. Detecting brain shift during deep brain stimulation surgery using intra-operative data and functional atlases: a preliminary study. In: IEEE International Symposium on Biomedical Imaging (ISBI): From Nano to Macro, pp. 362–365.
  32. Pallavaram S, Dawant BM, Koyama T, Yu H, Neimat JS, Konrad PE, et al. Validation of a fully automatic method for the routine selection of the anterior and posterior commissures in MR images. J. Stereotact. Funct. Neurosurg. 2009;87:148–154
  33. Pallavaram S, Dawant BM, Remple M, Neimat JS, Kao C, Konrad PE, et al. Effect of brain shift on the creation of functional atlases for deep brain stimulation surgery. In: International Journal of Computer Assisted Radiology and Surgery. Berlin/Heidelberg: Springer; 2009;doi:10.1007/s11548-009-0391-1. ISSN:1861-6410
  34. Plaha P, Ben-Shlomo Y, Patel NK, Gill SS. Stimulation of the caudal zona incerta is superior to stimulation of the subthalamic nucleus in improving contralateral parkinsonism. Brain. 2006;129(7):1732–1747
  35. Rohde GK, Aldroubi A, Dawant BM. The adaptive bases algorithm for intensity-based nonrigid image registration. IEEE Trans Med Imaging. 2003;22(11):1470–1479
  36. Rohlfing, T., Maurer, C.J., 2004. Multi-classifier framework for atlas-based image segmentation. In: Paper Read at IEEE Computer Society Conference on Computer Vision and Pattern Recognition, at Washington, DC, USA.
  37. Rohlfing T, Maurer C, Dean D, Maciunas EJ. Effect of changing patient position from supine to prone on the accuracy of a Brown–Roberts–Wells stereotactic head frame system. Neurosurgery. 2003;52:610–618
  38. Schrader B, Hamel W, Weinert D, Mehdorn HM. Documentation of electrode localization. Mov. Disord. 2002;17(Suppl. 3):S167–S174
  39. Starr PA. Placement of deep brain stimulators in subthalamic nucleus or globus pallidus internus: technical approach. Stereotact. Funct. Neurosurg. 2002;79:118–145
  40. Thompson CJ, Hardy TL, Bertrand G. A system for anatomical and functional mapping of the human thalamus. Comput. Biomed. Res. 1997;10:9–24
  41. Videen TO, Campbell MC, Tabbal SD, Karimi M, Hershey T, Perlmutter JS. Validation of a fiducial-based atlas localization method for deep brain stimulation contacts in the area of the subthalamic nucleus. J. Neurosci. Methods. 2008;168:275–281
  42. Warfield SK, Zou KH, Wells WM. Simultaneous Truth and Performance Level Estimation (STAPLE): an algorithm for the validation of image segmentation. IEEE Trans Med Imaging. 2004;903:921
  43. Yelnik J, Bardinet E, Dormont D, Malandain G, Ourselin S, Tandé D, et al. A three-dimensional, histological and deformable atlas of the human basal ganglia. I. Atlas construction based on immunohistochemical and MRI data. Neuroimage. 2007;34:618–638

PII: S1361-8415(10)00101-5

doi: 10.1016/j.media.2010.07.009

Medical Image Analysis
Volume 16, Issue 3 , Pages 744-753 , April 2012

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